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Categories of resources

Suggested Readings
 
 
A compilation and categorization of next-generation sequencing resources

Geneious

Tool nameGeneious
URLhttp://www.geneious.com/
Important features1. The Geneious Pro sequence viewer is a landmark innovation in the field of sequence analysis and is a critical feature that differentiates Geneious Pro from all other competitors. 2. Geneious chooses the viewers which suit the selected data automatically. 3. It displays DNA and protein sequences with annotations alongside sequences and visualize your entire contig of regular or NGS sequence data and zoom right down the nucleotide level to identify SNPs, regions of low/high coverage, or other interesting biological features. 4. It displays sequences with their sequence traces and visualize the success of your experiment with the quality score coloring scheme.
Citations
Year of publicationNot available
Rank by usage frequency100
CommentsFree trial downloadable version is available for 14 days.
FunctionAlignment/Mapping, De novo assembler, Reference assembler, Visualization, SNP discovery, Indel discovery, Structural variant discovery, RNA seq analysis, Software package
CategoryPaid, Downloadable
License
Status
Input file formatSAM/BAM format, FASTQ, .bed, FASTA, genbank flat, .csFasta, .sff, .txt,.seq
Output file formatSAM/BAM format, BED, FASTQ, .qual,genbank flat,FASTA, geneious format
Operating systemWindows, Mac OS X, Linux
Operating languageJava 6
PlatformABI SOLiD, Illumina/Solexa, Roche 454
Maintained byMax Planck Institute for Developmental Biology, TFCbingen
Downloadable file format
Submission file format

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